Correlations between topological features and physicochemical properties of molecules

The article reviews in brief, thede novo group additivity approach and, at length, the different topological approaches to obtain predictive and internally consistent correlations between various properties and structural features of molecules. The stress has mainly been on the molecular connectivity method. A new rational scheme for nomenclature of connectivity indices of different orders and types is introduced. The concept of the perturbation connectivity parameter developed by us recently has been applied to obtain correlations for molar refraction, boiling point, molar volume, heat of atomisation, heat of combustion, heat of vaporisation, magnetic susceptibility and critical constants of alkanes, alcohols and alkylbenzenes. A comparative study of various approaches reveals that the present perturbation topological approach has an edge over other similar methods.     

Protein surface recognition by synthetic receptors based on a tetraphenylporphyrin scaffold

[structure: see text] Receptors based on a tetraphenylporphyrin scaffold bearing different charged and hydrophobic groups have been synthesized. The interactions of these with horse heart cytochrome c were studied by fluorescence spectroscopy. Receptor 4 was identified to be the strongest synthetic receptor (K(d) = 20 nM) for cytochrome c. The differences in affinity among the receptors reflected a dependence on the number of anionic and hydrophobic groups.     

A study of nuclear prenylation of 2,4-dihydroxy phenyl benzyl ketone: Syntheses of linear and angular 6″,6″-dimethyl pyrano-isoflavones,and their 2-methyl and 2-phenyl analogues

2,4-Dihydroxyphenyl benzyl ketone (I) condenses with 2-methyl but-3-en-2-ol in the presence of boron trifluoride etherate to afford a mixture of 3-C-, 5-C- and 3,5-di C C-prenyl derivatives separable by chromatography. The above mixture without the 5-C-prenyl but with the 4-O-prenyl derivative results when ketone I is treated with prenyl bromide in the presence of methanolic potash. 3-C-(III a) and 5-C-(IV) prenyl derivatives undergo ready oxidative cyclization with DDQ to yield the corresponding pyrano derivatives VIII and XII respectively which form good starting materials for various isoflavone condensations. Thus both linear and angular 6″,6″-dimethyl pyrano-isoflavones and their 2-methyl and 2-phenyl analogues have been synthesized.     

Role of partially flocculated sols in emulsion stability

Summary The stability of emulsion of Toluene in water stabilized by partially flocculated ferric hydroxide sol has been studied. The size of the emulsion droplets as determined by size frequency analysis is found to be of 1.1 μ radius. The flocculation studies were carried out haemocytometrically at different amount of electrolytes and at different p_H values. The electrokinetic potential ‘ζ’ was determined micro-electrophoretically at different amounts of electrolytes and also at different p_H's. In the case of tri and tetra valent anions the charge reversal was observed. In the light of the D.V.O. theory the interaction energy profiles were drawn and 2–6 kT deep secondary minima obtained showing thereby the occurrence of reversible flocculation. Degree of aggregation has been calculated theoretically at different values of ‘A’ and the value of A was found to be 1.0×10⁻¹² erg to fit the value of degree of aggregation obtained haemocytometrically. The charge densities and binding parameters have also been calculated.     

Structures of E. coli peptide deformylase bound to formate: insight into the preference for Fe2+ over Zn2+ as the active site metal

E. coli peptide deformylase (PDF) catalyzes the deformylation of nascent polypeptides generated during protein synthesis. While PDF was originally thought to be a zinc enzyme, subsequent studies revealed that the active site metal is iron. In an attempt to understand this unusual metal preference, high-resolution structures of Fe-, Co-, and Zn-PDF were determined in complex with its deformylation product, formate. In all three structures, the formate ion binds the metal and forms hydrogen-bonding interactions with the backbone nitrogen of Leu91, the amide side chain of Gln50, and the carboxylate side chain of Glu133. One key difference, however, is how the formate binds the metal. In Fe-PDF and Co-PDF, formate binds in a bidentate fashion, while in Zn-PDF, it binds in a monodentate fashion. Importantly, these structural results provide the first clues into the origins of PDF's metal-dependent activity differences. On the basis of these structures, we propose that the basis for the higher activity of Fe-PDF stems from the better ability of iron to bind and activate the tetrahedral transition state required for cleavage of the N-terminal formyl group.     

Reverse isotope dilution alpha spectrometry using plutionium-239 spike for determining plutonium concentration in high burn-up fuel samples without purification from americium-241 and a bulk of other impurities

A reverse isotope dilution alpha spectrometric /R-IDAS/ method using²³⁹Pu as a spike is described for the determination of plutonium concentration in high burn-up fuel samples wth²³⁸Pu/(²³⁹Pu+²⁴⁰Pu) alpha activity ratio >0.5, without resorting to any purification from²⁴¹Am and a bulk of other impurities. It involves the addition of a pre-clibrated spike solution to a known aliquot of the plutonium sample solution followed by source preparation using TEG as a spreading agent. The results obtained on a number of plutonium samples containing 20–80% of²⁴¹Am /alpha activity wise/ using this method are compared with those achieved by R-IDAS using purification with TTA, with respect to precision and accuracy. Precision and accuracy of 0.5% are demonstrated. This method eliminates the need of any separation and purification of plutonium from²⁴¹Am and a bulk of other impurities like uranium.     

Structural and electronic properties of Si n, Si n+, and AlSi n-1 (n=2-13) clusters: theoretical investigation based on ab initio molecular orbital theory

The geometric and electronic structures of Si(n), Si(n) (+), and AlSi(n-1) clusters (2< or =n< or =13) have been investigated using the ab initio molecular orbital theory under the density functional theory formalism. The hybrid exchange-correlation energy function (B3LYP) and a standard split-valence basis set with polarization functions [6-31G(d)] were employed for this purpose. Relative stabilities of these clusters have been analyzed based on their binding energies, second difference in energy (Delta (2)E) and fragmentation behavior. The equilibrium geometry of the neutral and charged Si(n) clusters show similar structural growth. However, significant differences have been observed in the electronic structure leading to their different stability pattern. While for neutral clusters, the Si(10) is magic, the extra stability of the Si(11) (+) cluster over the Si(10) (+) and Si(12) (+) bears evidence for the magic behavior of the Si(11) (+) cluster, which is in excellent agreement with the recent experimental observations. Similarly for AlSi(n-1) clusters, which is isoelectronic with Si(n) (+) clusters show extra stability of the AlSi(10) cluster suggesting the influence of the electronic structures for different stabilities between neutral and charged clusters. The ground state geometries of the AlSi(n-1) clusters show that the impurity Al atom prefers to substitute for the Si atom, that has the highest coordination number in the host Si(n) cluster. The fragmentation behavior of all these clusters show that while small clusters prefers to evaporate monomer, the larger ones dissociate into two stable clusters of smaller size.     

Delivery of Benzoporphyrin Derivative, a Photosensitizer, into Atherosclerotic Plaque of Watanabe Heritable Hyperlipidemic Rabbits and Balloon-Injured New Zealand Rabbits

Abstract— In this study we compared the plasma distribution and arterial accumulation of a photosensitizer, benzoporphyrin derivative (BPD), in two models of atherosclerosis: the spontaneous lesions of the Watanabe heritable hyperlipidemic (WHHL) rabbit and induced lesions of the balloon-injured, cholesterol-fed New Zealand white (NZW) rabbit. Selective uptake and retention of a photosensitizer by the abnormal portion of a vessel is a necessity in order for photodynamic therapy to become a successful modality for inhibition of intimal hyperplasia, selective removal of atherosclerotic tissue or imaging of diseased arteries. Liposome-based formulations were compared to freshly isolated native low density lipoprotein (LDL) and acetylated-LDL (Ac-LDL) as delivery vehicles for BPD. Plasma distribution of the photosensitizer was analyzed by KBr density gradient ultracentrifuga-tion. Although the delivery vehicle influenced plasma distribution immediately postinjection, BPD subsequently partitioned according to the plasma concentration of the lipoproteins. Photosensitizer level in plaque and normal artery specimens was determined by ethyl acetate extraction and spectrofluorometric measurement. The measurement of BPD in normal and atherosclerotic arterial tissue demonstrated a selective accumulation in atherosclerotic tissue. Preassociation with LDL and Ac-LDL enhanced accumulation of BPD in atherosclerotic tissue when compared with normal artery (mean ratios of 2.8 and 4.1 were achieved, respectively). These results indicate that the preferential uptake of BPD by atherosclerotic plaque can be enhanced by preassociation with plasma lipoproteins, suggesting that light activation could lead to a highly selective destruction of diseased vascular tissue.     

Complexometric determination of thorium in ThO2−PuO2

A method based on the complexometric titration of thorium using ethylene diaminetetra-acetic acid (EDTA) as complexant has been developed for the determination of thorium in thorium-plutonium solution without resorting to prior separation of plutonium. Plutonium in the form of Pu(VI) does not affect the thorium determination when present up to 10% in thorium—plutonium solution. For oxidation of plutonium to Pu(VI), HClO₄ or AgO was used. HClO₄ is preferred. The thorium values obtained without prior separation of plutonium are compared with those obtained after separating plutonium by anion exchange technique. A precision of ±0.5% has been obtained for 5–10 mg of thorium in the aliquot.     

Oximidobenzotetronic acid as a reagent for the separation and gravimetric determination of palladium and cobalt

Oximidobenzotetronic acid is recommended for the separation and gravimetric determination of palladium and cobalt An ethanolic solution of the reagent quantitatively precipitates palladium(II) from solutions which are 0.75 N in acid up to pH 5.1, the complex is weighed as Pd(C₉H₅NO₄)₂. Cobalt(II) can be determined in the filtrate after the precipitation of palladium. With 0.5 N acid solutions, no interference was found from Pt(IV), Ir(IV), Rh(III), Ru(III), Os(IV), Au(III), Ag(I), Cu(II), Fe(III), Ni(II), Hg(II). Pb(II), Bi(III), Cd(II), As(V), Se(VI), Te(IV), Mo(VI), Sb(III), Al(III), Cr(III), Zn(II), Ti(IV), Zr(IV). acetate, oxalate, citrate, tartrate, phosphate and fluoride.